Welcome to the Bacterial Genomics Page

Key Repositories

Our GitHub repository hosts a wide range of resources, including assembly workflows, analysis tools, and various tools we use for our research. Here are some of our notable repositories:

• Assembly Workflow Repository
• Assembly SNP Workflow Repository
• Leptospira Type Strains Repository

Assembly Workflow

This workflow assembles bacterial isolate genomes from paired-end Illumina FastQ files. Post-assembly contig correction is performed, and a variety of quality assessment processes are recorded throughout the workflow.

Assembly-based SNP Workflow

General workflow for genome assembly-based SNP phylogeny with optional recombination masking.

Contact & Collaboration

• Contributing Guidelines
• How to Add a Module

If you're interested in contributing to the project or have any inquiries, please reach out to us: